Class ProteinChainExtractor


  • public class ProteinChainExtractor
    extends java.lang.Object
    Extracts information about all the chains in a structure, including chain Ids, sequences, and atoms. Includes both protein and nucleic acid chains.
    • Method Detail

      • getCalphaTraces

        public java.util.List<Atom[]> getCalphaTraces()
      • getChainIds

        public java.util.List<java.lang.String> getChainIds()
      • getModelNumbers

        public java.util.List<java.lang.Integer> getModelNumbers()
      • getSequences

        public java.util.List<java.lang.String> getSequences()
      • getNucleicAcidChainCount

        public int getNucleicAcidChainCount()
        Returns:
        the nucleicAcidChainCount
      • getAdjustedMinimumSequenceLength

        public int getAdjustedMinimumSequenceLength()