Class HelixAxisAligner

    • Method Detail

      • getRadius

        public double getRadius()
        Description copied from class: AxisAligner
        Returns the radius for drawing polyhedra
        Specified by:
        getRadius in class AxisAligner
        Returns:
        double radius
      • getGeometicCenterTransformation

        public javax.vecmath.Matrix4d getGeometicCenterTransformation()
        Description copied from class: AxisAligner
        Returns a transformation matrix transform polyhedra for Cn structures. The center in this matrix is the geometric center, rather then the centroid. In Cn structures those are usually not the same.
        Specified by:
        getGeometicCenterTransformation in class AxisAligner
        Returns:
      • getGeometricCenter

        public javax.vecmath.Point3d getGeometricCenter()
        Description copied from class: AxisAligner
        Returns the geometric center of polyhedron. In the case of the Cn point group, the centroid and geometric center are usually not identical.
        Specified by:
        getGeometricCenter in class AxisAligner
        Returns:
      • getOrbits

        public java.util.List<java.util.List<java.lang.Integer>> getOrbits()
        Specified by:
        getOrbits in class AxisAligner
      • calcCenterOfRotation

        public javax.vecmath.Point3d calcCenterOfRotation()