Class SmithWaterman3DParameters

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.Short getGapExtend()  
      java.lang.Short getGapOpen()  
      java.util.List<java.lang.String> getUserConfigHelp()
      The help text for each of these parameters.
      java.util.List<java.lang.String> getUserConfigParameterNames()
      The labels to be displayed to the user for each parameter
      java.util.List<java.lang.String> getUserConfigParameters()
      get the list of parameters that the user can change through the user interface.
      java.util.List<java.lang.Class> getUserConfigTypes()
      Get the data types of the parameters
      void reset()
      Set the parameters to the default.
      void setGapExtend​(java.lang.Short gapExtend)  
      void setGapOpen​(java.lang.Short gapOpen)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • SmithWaterman3DParameters

        public SmithWaterman3DParameters()
    • Method Detail

      • getUserConfigParameters

        public java.util.List<java.lang.String> getUserConfigParameters()
        Description copied from interface: ConfigStrucAligParams
        get the list of parameters that the user can change through the user interface. Parameter names are the same names as the corresponding Get/Set methods.
        Specified by:
        getUserConfigParameters in interface ConfigStrucAligParams
        Returns:
        list of parameters
      • getGapExtend

        public java.lang.Short getGapExtend()
      • setGapExtend

        public void setGapExtend​(java.lang.Short gapExtend)
      • getGapOpen

        public java.lang.Short getGapOpen()
      • setGapOpen

        public void setGapOpen​(java.lang.Short gapOpen)