Class JointFragments


  • public class JointFragments
    extends java.lang.Object
    A utility class that defines which set of atoms are considered to be on equivalent positions.
    • Constructor Summary

      Constructors 
      Constructor Description
      JointFragments()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void add​(int p1, int p2, int start, int end)  
      java.util.List<int[]> getIdxlist()  
      double getRms()  
      void setIdxlist​(java.util.List<int[]> idxs)
      Stores the alignment between the residues of several fragments.
      void setRms​(double rms)  
      java.lang.String toString()  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    • Constructor Detail

      • JointFragments

        public JointFragments()
    • Method Detail

      • setIdxlist

        public void setIdxlist​(java.util.List<int[]> idxs)
        Stores the alignment between the residues of several fragments. Each int[] stores the residue numbers of several equivalent residues.
      • getRms

        public double getRms()
      • setRms

        public void setRms​(double rms)
      • getIdxlist

        public java.util.List<int[]> getIdxlist()
      • add

        public void add​(int p1,
                        int p2,
                        int start,
                        int end)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object